Index

A

affine_only_options() (greedyfhist.options.options.RegistrationOptions static method)

affine_registration() (in module greedyfhist.utils.utils) AffineGreedyOptions (class in greedyfhist.options.options)

B

build_cmd_string() (in module greedyfhist.utils.utils)

C

call_command() (in module greedyfhist.utils.utils) compose_inv_reg_transforms() (in module greedyfhist.utils.utils) compose_reg_transforms() (in module greedyfhist.utils.utils) composite_sitk_transforms() (in module greedyfhist.utils.utils) composite_warps() (in module greedyfhist.utils.utils)

compute_distance_for_lm() (in module greedyfhist.utils.metrics) compute_tre() (in module greedyfhist.utils.metrics) correct_img_dtype() (in module greedyfhist.utils.utils) cost_function (greedyfhist.options.options.AffineGreedyOptions attribute) (greedyfhist.options.options.NonrigidGreedyOptions attribute)

D

default_nrpt_options() (greedyfhist.options.options.NonrigidGreedyOptions static method) default_options() (greedyfhist.options.options.AffineGreedyOptions static method) (greedyfhist.options.options.NonrigidGreedyOptions static method) (greedyfhist.options.options.RegistrationOptions static method) (greedyfhist.options.options.TilingOptions static method)

default_options_nr() (greedyfhist.options.options.PreprocessingOptions static method) deformable_registration() (in module greedyfhist.utils.utils) derive_sampling_factors() (in module greedyfhist.utils.utils) dim (greedyfhist.options.options.AffineGreedyOptions attribute) (greedyfhist.options.options.NonrigidGreedyOptions attribute) dof (greedyfhist.options.options.AffineGreedyOptions attribute)

E

enable_tiling (greedyfhist.options.options.TilingOptions attribute) eucl() (in module greedyfhist.utils.metrics)

exp (greedyfhist.options.options.NonrigidGreedyOptions attribute) extract_image_tiles() (in module greedyfhist.utils.tiling)

G

get_tile_params() (in module greedyfhist.utils.tiling) greedyfhist.options.options module greedyfhist.utils.metrics module

greedyfhist.utils.tiling module greedyfhist.utils.utils module

I

ia (greedyfhist.options.options.AffineGreedyOptions attribute) (greedyfhist.options.options.NonrigidGreedyOptions attribute) image (greedyfhist.utils.tiling.ImageTile attribute)

ImageTile (class in greedyfhist.utils.tiling) iteration_pyramid (greedyfhist.options.options.AffineGreedyOptions attribute) (greedyfhist.options.options.NonrigidGreedyOptions attribute)

K

keep_affine_transform_unbounded (greedyfhist.options.options.AffineGreedyOptions attribute)

kernel_size (greedyfhist.options.options.AffineGreedyOptions attribute) (greedyfhist.options.options.NonrigidGreedyOptions attribute)

M

max_pyramid_depth (greedyfhist.options.options.TilingOptions attribute) min_overlap (greedyfhist.options.options.TilingOptions attribute) module greedyfhist.options.options greedyfhist.utils.metrics greedyfhist.utils.tiling greedyfhist.utils.utils

N

n_procs (greedyfhist.options.options.TilingOptions attribute) n_threads (greedyfhist.options.options.AffineGreedyOptions attribute) (greedyfhist.options.options.NonrigidGreedyOptions attribute)

nonrigid_only_options() (greedyfhist.options.options.RegistrationOptions static method) NonrigidGreedyOptions (class in greedyfhist.options.options) nrpt_only_options() (greedyfhist.options.options.RegistrationOptions static method)

O

original_shape (greedyfhist.utils.tiling.ImageTile attribute)

P

parse_cmdln_dict() (greedyfhist.options.options.RegistrationOptions static method) parse_dict() (greedyfhist.options.options.AffineGreedyOptions method) (greedyfhist.options.options.NonrigidGreedyOptions method) (greedyfhist.options.options.PreprocessingOptions method) (greedyfhist.options.options.TilingOptions method)

preprocessing_options (greedyfhist.options.options.AffineGreedyOptions attribute) (greedyfhist.options.options.NonrigidGreedyOptions attribute) PreprocessingOptions (class in greedyfhist.options.options) pyramid_resolutions (greedyfhist.options.options.TilingOptions attribute) pyramid_tiles_per_axis (greedyfhist.options.options.TilingOptions attribute)

R

reassemble_np() (in module greedyfhist.utils.tiling) reassemble_sitk_displacement_field() (in module greedyfhist.utils.tiling) reassemble_sitk_displacement_field_from_tile_size() (in module greedyfhist.utils.tiling) RegistrationOptions (class in greedyfhist.options.options)

resolution (greedyfhist.options.options.AffineGreedyOptions attribute) (greedyfhist.options.options.NonrigidGreedyOptions attribute) resolve_path_to_greedy() (in module greedyfhist.utils.utils) rigid_iterations (greedyfhist.options.options.AffineGreedyOptions attribute)

S

s1 (greedyfhist.options.options.NonrigidGreedyOptions attribute) s2 (greedyfhist.options.options.NonrigidGreedyOptions attribute)

stop_condition_pyramid_counter (greedyfhist.options.options.TilingOptions attribute) stop_condition_tile_resolution (greedyfhist.options.options.TilingOptions attribute)

T

tile_overlap (greedyfhist.options.options.TilingOptions attribute) tile_size (greedyfhist.options.options.TilingOptions attribute) tiling_mode (greedyfhist.options.options.TilingOptions attribute)

TilingOptions (class in greedyfhist.options.options) to_dict() (greedyfhist.options.options.AffineGreedyOptions method) (greedyfhist.options.options.NonrigidGreedyOptions method) tscale (greedyfhist.options.options.NonrigidGreedyOptions attribute)

U

use_gm_trim (greedyfhist.options.options.NonrigidGreedyOptions attribute)

use_sv (greedyfhist.options.options.NonrigidGreedyOptions attribute) use_svlb (greedyfhist.options.options.NonrigidGreedyOptions attribute)

X

x_props (greedyfhist.utils.tiling.ImageTile attribute)

Y

y_props (greedyfhist.utils.tiling.ImageTile attribute)