Welcome to GreedyFHist’s documentation.

GreedyFHist is a Python based tool for registration of stained images.

For examples in using GreedyFHist’s commandline interface, see examples.

For examples for interactive Python sessions, see the provided examples: examples/notebooks/groupwise.ipynb and examples/notebooks/pairwise.ipynb

Citing

Note

@article{wess2024spatial,

title={Spatial Integration of Multi-Omics Data using the novel Multi-Omics Imaging Integration Toolset}, author={Wess, Maximilian and Andersen, Maria K and Midtbust, Elise and Guillem, Juan Carlos Cabellos and Viset, Trond and St{o}rkersen, {O}ystein and Krossa, Sebastian and Rye, Morten Beck and Tessem, May-Britt}, journal={bioRxiv}, pages={2024–06}, year={2024}, publisher={Cold Spring Harbor Laboratory}

}